PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005181

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

LBD

Protein Properties

Length: 199aa MW: 22111.7 Da PI: 4.2687

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-96082554	PU_ref	plantGDB	View CDS
gnl\|UG\|Pta#S23009464	PU_unref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	83.3	3.6e-26	62	153	8	99
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++++C ++C+l f++++ +kfa+++++FGa nv++l+++lp ++r +a++slv+eA ar+++P G++g+i++lq+q++ l++++ ++++ Pta005181 62 KQKECLENCTLLYQFASNDLHKFAILQQVFGACNVVRLVQDLPSDQRVEAIDSLVFEASARLENPAFGCTGIIHQLQRQVSDLQSQITTTQT 153 4569**********************************************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.577	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-24	62	152	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
LRDFFLQIIH CGFGFALIQM SNSAEKQPMG TDMDDSEFQK QKECSEKPLT GSDLDDDSKV 60 QKQKECLENC TLLYQFASND LHKFAILQQV FGACNVVRLV QDLPSDQRVE AIDSLVFEAS 120 ARLENPAFGC TGIIHQLQRQ VSDLQSQITT TQTTIEKIRS QQAVLLASLA GFNAPGEDGN 180 KFKPTTSASP KDDDDQDED

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.19587	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P1U3	1e-56	A9P1U3_PICSI; Putative uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-26	LOB domain-containing protein 1